Comparative phylogenetic analysis of Dobrava-Belgrade virus l and s genetic segments isolated from an animal reservoir in Serbia
Autori
Nikolić, ValentinaStajković, Novica
Stamenković, Gorana
Čekanac, Radovan
Marušić, Predrag
Jovanović, N.
Krstić, Milena
Mladenović, Jovan
Siljić, Marina
Gligić, Ana
Stanojević, Maja
Članak u časopisu (Objavljena verzija)
Metapodaci
Prikaz svih podataka o dokumentuApstrakt
The Dobrava-Belgrade virus (DOBV) is a member of the Bunyaviridae family, genus Hantavirus, possessing a single-stranded RNA genome consisting of three segments, designated L (large), M (medium) and S (small). In this study, we present phylogenetic analysis of a newly detected DOBV strain isolated from Apodemus agrarius. Analysis was based on partial L and S segment sequences, in comparison to previously published DOBV sequences from Serbia and elsewhere. A phylogenetic tree based on partial S segment revealed local geographical clustering of DOBV sequences from Serbia, unrelated to host (rodent or human). The topology of the phylogenetic tree was confirmed with a high percent of completely or partially resolved quartets in likelihood-mapping analysis, whereas no evidence of possible recombination in the examined S segment data set was found.
Ključne reči:
DOBV / phylogenetic analysis / likelihood mapping / recombinationIzvor:
Archives of Biological Sciences, 2014, 66, 2, 497-506Izdavač:
- Srpsko biološko društvo, Beograd, i dr.
DOI: 10.2298/ABS1402497N
ISSN: 0354-4664
WoS: 000342265800007
Scopus: 2-s2.0-84903945907
Institucija/grupa
TorlakTY - JOUR AU - Nikolić, Valentina AU - Stajković, Novica AU - Stamenković, Gorana AU - Čekanac, Radovan AU - Marušić, Predrag AU - Jovanović, N. AU - Krstić, Milena AU - Mladenović, Jovan AU - Siljić, Marina AU - Gligić, Ana AU - Stanojević, Maja PY - 2014 UR - http://intor.torlakinstitut.com/handle/123456789/405 AB - The Dobrava-Belgrade virus (DOBV) is a member of the Bunyaviridae family, genus Hantavirus, possessing a single-stranded RNA genome consisting of three segments, designated L (large), M (medium) and S (small). In this study, we present phylogenetic analysis of a newly detected DOBV strain isolated from Apodemus agrarius. Analysis was based on partial L and S segment sequences, in comparison to previously published DOBV sequences from Serbia and elsewhere. A phylogenetic tree based on partial S segment revealed local geographical clustering of DOBV sequences from Serbia, unrelated to host (rodent or human). The topology of the phylogenetic tree was confirmed with a high percent of completely or partially resolved quartets in likelihood-mapping analysis, whereas no evidence of possible recombination in the examined S segment data set was found. PB - Srpsko biološko društvo, Beograd, i dr. T2 - Archives of Biological Sciences T1 - Comparative phylogenetic analysis of Dobrava-Belgrade virus l and s genetic segments isolated from an animal reservoir in Serbia EP - 506 IS - 2 SP - 497 VL - 66 DO - 10.2298/ABS1402497N ER -
@article{ author = "Nikolić, Valentina and Stajković, Novica and Stamenković, Gorana and Čekanac, Radovan and Marušić, Predrag and Jovanović, N. and Krstić, Milena and Mladenović, Jovan and Siljić, Marina and Gligić, Ana and Stanojević, Maja", year = "2014", abstract = "The Dobrava-Belgrade virus (DOBV) is a member of the Bunyaviridae family, genus Hantavirus, possessing a single-stranded RNA genome consisting of three segments, designated L (large), M (medium) and S (small). In this study, we present phylogenetic analysis of a newly detected DOBV strain isolated from Apodemus agrarius. Analysis was based on partial L and S segment sequences, in comparison to previously published DOBV sequences from Serbia and elsewhere. A phylogenetic tree based on partial S segment revealed local geographical clustering of DOBV sequences from Serbia, unrelated to host (rodent or human). The topology of the phylogenetic tree was confirmed with a high percent of completely or partially resolved quartets in likelihood-mapping analysis, whereas no evidence of possible recombination in the examined S segment data set was found.", publisher = "Srpsko biološko društvo, Beograd, i dr.", journal = "Archives of Biological Sciences", title = "Comparative phylogenetic analysis of Dobrava-Belgrade virus l and s genetic segments isolated from an animal reservoir in Serbia", pages = "506-497", number = "2", volume = "66", doi = "10.2298/ABS1402497N" }
Nikolić, V., Stajković, N., Stamenković, G., Čekanac, R., Marušić, P., Jovanović, N., Krstić, M., Mladenović, J., Siljić, M., Gligić, A.,& Stanojević, M.. (2014). Comparative phylogenetic analysis of Dobrava-Belgrade virus l and s genetic segments isolated from an animal reservoir in Serbia. in Archives of Biological Sciences Srpsko biološko društvo, Beograd, i dr.., 66(2), 497-506. https://doi.org/10.2298/ABS1402497N
Nikolić V, Stajković N, Stamenković G, Čekanac R, Marušić P, Jovanović N, Krstić M, Mladenović J, Siljić M, Gligić A, Stanojević M. Comparative phylogenetic analysis of Dobrava-Belgrade virus l and s genetic segments isolated from an animal reservoir in Serbia. in Archives of Biological Sciences. 2014;66(2):497-506. doi:10.2298/ABS1402497N .
Nikolić, Valentina, Stajković, Novica, Stamenković, Gorana, Čekanac, Radovan, Marušić, Predrag, Jovanović, N., Krstić, Milena, Mladenović, Jovan, Siljić, Marina, Gligić, Ana, Stanojević, Maja, "Comparative phylogenetic analysis of Dobrava-Belgrade virus l and s genetic segments isolated from an animal reservoir in Serbia" in Archives of Biological Sciences, 66, no. 2 (2014):497-506, https://doi.org/10.2298/ABS1402497N . .